Index

A

add_arg_prefix() (in module rindti.utils)

assess_dataset() (BaseBaseline method)

B

BaseBaseline (class in rindti.models.dti.baseline)

BaseLayer (class in rindti.layers.base_layer) BaseModel (class in rindti.models.base_model)

C

ChebConvNet (class in rindti.layers.graphconv) ClassificationModel (class in rindti.models.dti)

configure_optimizers() (BaseModel method) corrupt_features() (in module rindti.data)

D

DataCorruptor (class in rindti.data) DiffPoolNet (class in rindti.layers.graphpool)

DTIDataModule (class in rindti.data) DTIDataset (class in rindti.data)

F

FilmConvNet (class in rindti.layers.graphconv) fit() (BaseBaseline method) (Max method) (ProtDrugMax method) forward() (BaseLayer method) (ChebConvNet method) (ClassificationModel method) (DiffPoolNet method) (FilmConvNet method) (GatConvNet method) (GeneralisedLiftedStructureLoss method) (GINConvNet method) (GMTNet method) (MeanPool method) (MLP method) (PNAConvNet method) (TransformerNet method)

G

GatConvNet (class in rindti.layers.graphconv) GeneralisedLiftedStructureLoss (class in rindti.losses)

get_git_hash() (in module rindti.utils) GINConvNet (class in rindti.layers.graphconv) GMTNet (class in rindti.layers.graphpool)

I

index() (PreTrainDataset method)

IterDict (class in rindti.utils)

L

log_all() (BaseModel method)

log_histograms() (BaseModel method)

M

mask_features() (in module rindti.data) Max (class in rindti.models.dti.baseline) MeanPool (class in rindti.layers.graphpool) minmax_normalise() (in module rindti.utils) MLP (class in rindti.layers.other) module rindti.data rindti.layers.graphconv rindti.layers.graphpool rindti.layers.other rindti.losses rindti.models.dti rindti.models.dti.baseline rindti.utils

N

n_edges() (TwoGraphData method)

n_nodes() (TwoGraphData method)

P

plot_loss_count_dist() (in module rindti.utils) PNAConvNet (class in rindti.layers.graphconv) predict() (BaseBaseline method) (Max method) predict_pair() (BaseBaseline method) (Max method) (ProtDrugMax method)

PreTrainDataModule (class in rindti.data) PreTrainDataset (class in rindti.data) process() (DTIDataset method) (PreTrainDataset method) processed_file_names (DTIDataset property) (PreTrainDataset property) ProtDrugMax (class in rindti.models.dti.baseline)

R

read_config() (in module rindti.utils) recursive_apply() (in module rindti.utils) RegressionModel (class in rindti.models.dti) remove_arg_prefix() (in module rindti.utils) rindti.data module rindti.layers.graphconv module rindti.layers.graphpool module

rindti.layers.other module rindti.losses module rindti.models.dti module rindti.models.dti.baseline module rindti.utils module

S

setup() (DTIDataModule method) (PreTrainDataModule method)

SizeFilter (class in rindti.data) SoftNearestNeighborLoss (class in rindti.losses) split_random() (in module rindti.utils)

T

test_epoch_end() (BaseModel method) test_metrics() (BaseBaseline method) test_step() (BaseModel method) to_prob() (in module rindti.utils)

training_epoch_end() (BaseModel method) training_step() (BaseModel method) TransformerNet (class in rindti.layers.graphconv) TwoGraphData (class in rindti.data)

U

update_config() (DTIDataModule method) (PreTrainDataModule method)

V

validation_epoch_end() (BaseModel method)

validation_step() (BaseModel method)

W

write_config() (in module rindti.utils)